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pyrovelocity
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pyrovelocity
  • Pyro-Velocity
  • Troubleshooting
  • Installation
  • Tutorials
    • Pancreas Development
    • PBMCs
    • Lineage Tracing
  • API
    • User
      • pyrovelocity.api
      • pyrovelocity.data
      • pyrovelocity.plot
      • pyrovelocity.utils
      • pyrovelocity.cytotrace
    • Developer
      • pyrovelocity._velocity
      • pyrovelocity._trainer
      • pyrovelocity._velocity_module
      • pyrovelocity._velocity_model
  • Contributing
  • Credits
  • History
  • GitHub
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Tutorials#

  • Pancreas Development
    • Check jupyter notebook
    • Load modules
    • Apply Model 1 to training and validation cells in pancreas
    • Apply Model 1 to all cells
    • Assemble figure
    • More uncertainty evaluation metrics
  • PBMCs
    • Load modules
    • Reproduce fully mature cell type problem
    • PBMC Pyro-velocity estimation of uncertainty
  • Lineage Tracing
    • Load modules
    • Download filtered dataset
    • Apply Model 2 to all cells in LARRY (multi-fate dataset)
    • More uncertainty estimation for LARRY
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