User

• pyrovelocity.api
  • set_loss_plot_axes()
  • train_model()
• pyrovelocity.data
  • assign_colors()
  • copy_raw_counts()
  • get_high_us_genes()
  • get_thresh_histogram_title_from_path()
  • load_data()
  • load_larry()
  • load_pbmc68k()
  • load_unipotent_larry()
  • plot_high_us_genes()
• pyrovelocity.plot
  • align_trajectory_diff()
  • compute_mean_vector_field()
  • compute_volcano_data()
  • denoised_umap()
  • get_clone_trajectory()
  • get_posterior_sample_angle_uncertainty()
  • mae_per_gene()
  • plot_arrow_examples()
  • plot_dynamic_pyro()
  • plot_evaluate_dynamic_orig()
  • plot_gene_ranking()
  • plot_mean_vector_field()
  • plot_multigenes_dynamical()
  • plot_posterior_time()
  • plot_state_uncertainty()
  • plot_vector_field_uncertain()
  • project_grid_points()
  • rainbowplot()
  • set_colorbar()
  • us_rainbowplot()
  • vector_field_uncertainty()
• pyrovelocity.utils
  • anndata_counts_to_df()
  • attributes()
  • debug()
  • ensure_numpy_array()
  • filter_startswith_dict()
  • generate_sample_data()
  • get_pylogger()
  • get_velocity_samples()
  • init_with_all_cells()
  • inv()
  • log()
  • mRNA()
  • mae()
  • mae_evaluate()
  • mse_loss_sum()
  • ode_mRNA()
  • pretty_print_dict()
  • print_anndata()
  • print_attributes()
  • rescale_time()
  • site_is_discrete()
  • tau_inv()
  • trace()
  • velocity_dus_dt()
• pyrovelocity.cytotrace
  • FNNLSa()
  • align_diffrate()
  • any()
  • batch_cytotrace()
  • census_normalize()
  • compare_cytotrace()
  • compare_cytotrace_ncores()
  • compute_gcs()
  • compute_similarity1()
  • compute_similarity2()
  • convert_to_markov()
  • cumulative_boxplot()
  • cytotrace()
  • cytotrace_ncore()
  • diffused()
  • find_nonzero()
  • plot_multiadata()
  • regressed()
  • remove_zero_mvg()